Hello,
there are 300 views for this thread, and not one response. I've got the same problem using an intel mac using osx10.4
in the preferences you have a page with saving items. There is the one called: save workspace in document. Please look, weather this position is marked. As ConceptDraw MindMap has the option, to save the Workspace, but if the workspace will be saved in the document - witch makes sense - this option will not be available in ConceptDraw VI...
I would suggest to save an empty document with the workspace settings and all your required tools and reopen the program trough this file.
(Have not seen the 1st posting... sorry!)